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Thank you for your help!

–Pete

Yes! After deactivating affiliates, the referrals works correctly.

Is it possible to use both plug-ins together, or will I have to choose between?

–Pete

I think this is all active.

Affiliate Version 3.1.3
Akismet Version 2.5.7
All in one Favicon Version 4.3
All In One SEO Pack Version 2.0.2
Another WordPress Classifieds Plugin (AWPCP) Version 2.2.1
Avatars Version 11.2
Bad Behavior Version 2.2.14
Blubrry PowerPress Version 4.0.8
Cafepress Widget Version 1.0.5
Comments Plus Version 1.6.2
Configure SMTP Version 3.1
ContestHopper Version 0.9.3
Event Organiser Version 2.1.4
Exclude Pages from Navigation Version 1.92
Fast Secure Contact Form Version 3.1.8.2
Floating Social Version 1.7.1
Google+ Plugin Version 1.4.1
Google AdSense Plugin Version 1.19
Google XML Sitemap Version 0.1.1
Jetpack by WordPress.com Version 2.2.5
MarketPress Version 2.8.7
Newsletter Version 3.3.1
Nice PayPal Button Version 1.04
Official StatCounter Plugin Version 1.6.3
PlayPress Version 1.2.1
Polldaddy Polls & Ratings Version 2.0.19
Post Voting Version 2.1.6
Rebranded Meta Widget Version 1.0.2
Stop Spammer Registrations Plugin Version 4.3
Store Locator Plus Version 3.11.7
Twenty Eleven Theme Extensions Version 1.2
Twitter Goodies Version 7.8.1
Ultimate Branding Version 1.1.6
Ultimate TinyMCE Version 4.7
WordPress Backup to Dropbox Version 1.5.4
WPMU DEV Dashboard Version 3.2.6
YouTube Featured Video Version 1.1

https://www.parahunter.com/contests/

After re-install and creating new contest, it still does not give referral entries.

–Pete