TheUglyBug

Hello again,

The footer does seem to call wp_footer()

<?php
/* Always have wp_footer() just before the closing </body>
* tag of your theme, or you will break many plugins, which
* generally use this hook to reference JavaScript files.
*/

wp_footer();
?>

Any other reasons why the java would not be running?

It is a custom theme, but it did not change. Essentially the only thing that changed is that we pointed the new domain to the hosting.