After the update the scanner reports 92 critical issues and 645 issues, which of these 645 issues, most of them are ‘New File’. So I guess the problem is fixed so thank you for the support!
I am attaching screenshots of the full file paths and the file system section. Also the server is running PHP 7.2.0. I could provide more information if needed.
Yes, there is a green mark “Verified”. I am attaching a screenshot of the Site Integrity panel. I should note that the WordPress was installed about 6 months ago, so it is relatively new.