I have the same problem. The generated code below shows that the widget-controller only creates an empty area between <ul>
brackets. Below the empty area you can see the same widget when I didn’t use the widget-controller.
In the top widget, I selected “Widget controller” together with related categories, posts and pages. I didn’t select any of the top options: “home” “error” “search” “archive”. But I tried that, it didnt help.
Can it be something to do with colliding functionality between different plugins (I only use blog-in-blog) or the theme (I use mantra)?
<div id="primary" class="widget-area" role="complementary">
<ul class="xoxo">
</ul>
<ul class="xoxo">
<li id="nav_menu-3" class="widget-container widget_nav_menu"><h3 class="widget-title">Om klubben</h3><div class="menu-om-klubben-container"><ul id="menu-om-klubben" class="menu">.....
...
</div><!-- #primary .widget-area -->