I have the same type of behaviour here.
With a post containing:
[singlepic id=abc]
[include-page id=xyz]
the singlepic shortcodes in the post don’t resolve.
The singlepics in the included page do resolve.
If I remove the include-page tag, the singlepics of the main post are resolved again.
Going back to NextGen 1.9.13 did it for me.