Nevermind, the player will handle php scripts that redirect to the actual mp3 file just fine. You just have to urlencode stuff.
In my case
<script type="text/javascript">
AudioPlayer.embed("audioplayer_1", {
soundFile: "podcast/play.php<?php print(urlencode("?source=swf&file=".$_GET['audiofile'])); ?>",
artists: "<?php print($_GET['audioautor']); ?>",
titles: "<?php print($_GET['audiotitel']); ?>"
});
</script>