It looks like I’ve found the issue. The third step in the 3 step process links Site Kit to the Search Console property. Somehow it had created an https:// version of the site, and not an https:// version and was not associating the two accounts.
To resolve the issue I created an https:// version of my site in Search Console, disconnected my account from Site Kit, Reset Site Kit, then re-authenticated. All is working as intended now.
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This reply was modified 4 years, 8 months ago by iannerney.