I did not… However, I discovered that the issue was caused by WP_Minify. I truly don’t know if there is a connection with the Fix JS Loading option and that plugin but my site was working just fine until I checked that button and everything broke. I ended up creating a whole new site as nothing I did could fix the other one. Then I installed a caching plugin which enabled WP_Minify and boom! it broke it in the exact same way that my original blog/theme did. So I still had that original in a separate location and disabled WP_Minify and everything went back to normal. So if you have that plugin installed, I advise you to disable it and check your theme again.
Hopefully this information will be useful. Good luck.
