@wpyogi,
I had a backup of the 3.9.2 installation and when the upgrade to 4.1.1 did not go as planned I restored to the older version. I am in the middle of promoting the site to production. When I am done and have two secs, I will go back and recreate the upgrade problem and start to debug it as you suggested by disabling the plugins to see if one of them was the offending party. I will also try @jrcwp’s suggestion regarding editing the wp-options settings. Will post again when I have more info. Thanks