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I also canot modify the order in woocommerce but have to go to PayPal and edit the subscription for the correct amount.

I also have this message at the top of the dashboard:
The HubSpot plugin isn’t connected right now. To use HubSpot tools on your WordPress site, connect the plugin now.
I click the link and it takes me to the nonworking Settings page.

My site is still down and no one from wordpress has responded.
I have disabled the plugins folder by renaming it. I still cant access the site or the wp-admin page – 500 internal server error.
Here are the WP error_logs:
[25-Sep-2015 02:11:16 UTC] PHP Notice: Undefined variable: result in /home2/pos/public_html/wp-content/plugins/appointments/includes/class.gcal.php on line 1239
[25-Sep-2015 02:11:17 UTC] PHP Notice: like_escape is deprecated since version 4.0! Use wpdb::esc_like() instead. in /home2/pos/public_html/wp-includes/functions.php on line 3406
[25-Sep-2015 02:11:17 UTC] PHP Notice: like_escape is deprecated since version 4.0! Use wpdb::esc_like() instead. in /home2/pos/public_html/wp-includes/functions.php on line 3406
[25-Sep-2015 02:11:17 UTC] PHP Notice: Undefined variable: result in /home2/pos/public_html/wp-content/plugins/appointments/includes/class.gcal.php on line 1239
[25-Sep-2015 02:11:17 UTC] PHP Notice: Undefined index: pages in /home2/pos/public_html/wp-content/plugins/marketpress/includes/public/class-mp-public.php on line 86
[25-Sep-2015 02:11:17 UTC] PHP Notice: Undefined index: pages in /home2/pos/public_html/wp-content/plugins/marketpress/includes/public/class-mp-public.php on line 90
[25-Sep-2015 02:11:17 UTC] PHP Notice: Undefined index: pages in /home2/pos/public_html/wp-content/plugins/marketpress/includes/public/class-mp-public.php on line 94

Follow-up – noticed that WordPress News in the dashboard says this:
RSS Error: WP HTTP Error: Problem with the SSL CA cert (path? access rights?)

Appointments+ no longer works either:

Notice: like_escape is deprecated since version 4.0! Use wpdb::esc_like() instead. in /home2/pos/public_html/wp-includes/functions.php on line 3406

Notice: like_escape is deprecated since version 4.0! Use wpdb::esc_like() instead. in /home2/pos/public_html/wp-includes/functions.php on line 3406

Notice: Undefined variable: result in /home2/pos/public_html/wp-content/plugins/appointments/includes/class.gcal.php on line 1239

These are the current server program versions:

Program
Version
Apache:
2.2.29
CentOS:
CentOS release 6.7 (Final)
cPanel:
11.48.4 (build 7)
Curl:
7.12.1
MySQL
5.5.42-37.1
phpMyAdmin
4.3.8
Python:
2.6.6
Program
Version
Perl:
5.8.8
PHP:
5.4.43
ionCube Loader:
4.7.4
Zend Optimizer:
Ruby:
1.8.7
Rails:
2.3.18
OpenSSL:
1.0.1e-fips