?Using java script in wordpress?

I have been trying to figure out how to use javascript with in word press posts. I want to call a peice of flash without the nsightly IE box. I have made it so that the header is flash and hard coded that into the template. It works fines like that.
here is the xhtml compliant code I use to call the JS

<script type="text/javascript">
//<![CDATA[

	if (AC_FL_RunContent == 0) {
		alert("This page requires AC_RunActiveContent.js.");
	} else {
		AC_FL_RunContent(
			'codebase', 'https://download.macromedia.com/pub/shockwave/cabs/flash/swflash.cab#version=9,0,0,0',
			'width', '100',
			'height', '100',
			'src', 'https://blog.peakstudois.com/index2',
			'quality', 'high',
		'pluginspage', 'https://www.macromedia.com/go/getflashplayer',
			'align', 'middle',
			'play', 'true',
			'loop', 'true',
			'scale', 'showall',
			'wmode', 'window',
			'devicefont', 'false',
			'id', 'index2',
			'bgcolor', '#ffffff',
			'name', 'index2',
			'menu', 'true',
			'allowFullScreen', 'false',
			'allowScriptAccess','sameDomain',
			'movie', 'index2',
			'salign', ''
			); //end AC code
	}
//]]>
</script>
<noscript>
	<object classid="clsid:d27cdb6e-ae6d-11cf-96b8-444553540000" codebase="https://download.macromedia.com/pub/shockwave/cabs/flash/swflash.cab#version=9,0,0,0" width="100" height="100" id="index2" align="middle">
	<param name="allowScriptAccess" value="sameDomain" />
	<param name="allowFullScreen" value="false" />
	<param name="movie" value="index2.swf" /><param name="quality" value="high" /><param name="bgcolor" value="#ffffff" />	<embed src="index2.swf" quality="high" bgcolor="#ffffff" width="100" height="100" name="index2" align="middle" allowScriptAccess="sameDomain" allowFullScreen="false" type="application/x-shockwave-flash" pluginspage="https://www.macromedia.com/go/getflashplayer" />
	</object>
</noscript>

when I do this inside a blog it put a “\” before every quote. I have done some debugging on this to find that it happens when the page is created for reading. I found this out by actually placing the code above in a post through the DB. it shows up fine in the DB and is change when you go to the home page. to see what I’m talking about please goto https://blog.peakstudios.com and veiw source.

Thanks!
Quince Wyss