Unportable statements in wp-cli.php
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I use external cron task to synchronize comments. There are unportable statements in lib/wp-cli.php file. Each time I upgrade plugin I have to manually correct this file.
The lines 24-25 contain:
if (isset($_ENV['WORDPRESS_PATH'])) { define('ABSPATH', $_ENV['WORDPRESS_PATH']);
but $_ENV array is not initialized in my installation (probably because of ini file). I suggest you replace these lines with portable version:
if (getenv('WORDPRESS_PATH')) { define('ABSPATH', getenv('WORDPRESS_PATH'));
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