Yeah, Thanks for sending my your FTP credentials, that was like a catch-22, you can’t change the permissions on those files because you don’t have permission to those files, LOL. I’m glad you were able to get GoDaddy to reset the permissions for you.
I found and removed that back-door that used the chmod function to change the permissions on all those files. Once the files were infected and the permissions changed we were unable to fix them until the permissions were fixed.
I just found 3 more files that were infected just this morning so I think you still have a problem on your site. I cleaned these new infections for you but I haven’t where they came from. All three files were infected at 1:10am GMT on the 10th (this morning). Can you check your war access_log files to see what activity at that time on your site may have caused this infection. If your not sure you can send me you raw access_log files.
Aloha, Eli