Hey Southdreamz,
Based on what I know about Super-Cache, I don’t think it matters that you have 2,000+ posts (congrats on reaching that milestone, by the way). What matters is the posts which actually receive hits. Those are the posts/pages that will be cached and served out statically to the next visitor. What I would suggest (again, take my advice with a grain of salt), is not force clear the cache (as Donncha pointed out, it’s an option on the admin page) if a lot of DIFFERENT posts receive hits.
For example, let’s say that your 1,000 daily visitors ended up viewing only 20 different posts. I think you could clear the cache (if you wanted) since it won’t take very long to destroy 20 cached files. However, if the same 1,000 daily visitors ended up viewing 500 different posts (probably a very rare situation), I wouldn’t clear the post since it would delay the time in publishing as Super-Cache has to clear all those cached files.
Just my two cents. ??