Hi Thesogeek,
we enabled some standard commands when the choice is enabled or disabled. These are triggered by some javascripts.
These default javascripts should show you if the plugin is working (or not).
The javascripts can be edited in the settings page of your WordPress admin panel.
Go to the Cookies -> Cookie Comliance
You will find there 4 boxes. A header and footer box for when cookies are enabled, and two boxes for when cookies are disabled.
These boxes should be used to activate scripts when cookie usage is allowed or disallowed.
By default we putted commands in those boxes. When you do not have anything to execute you can just empty them.
Save the settings after you empty the boxes. This will change this default behauviour of the plugin.
If you experience more problems, please let us know!