As far as I can see in the code, I have the same situation as Nathan (posted above). I am getting out-of-stock notifications, but not the order itself.
Here is the section to which I think you’re referring:
add_action(‘admin_init’, function(){
jigoshop_emails::register_mail(‘admin_order_status_pending_to_processing’, __(‘Order Pending to Processing for admin’), get_order_email_arguments_description());
jigoshop_emails::register_mail(‘admin_order_status_pending_to_completed’, __(‘Order Pending to Completed for admin’), get_order_email_arguments_description());
jigoshop_emails::register_mail(‘admin_order_status_pending_to_on-hold’, __(‘Order Pending to On-Hold for admin’), get_order_email_arguments_description());
jigoshop_emails::register_mail(‘customer_order_status_pending_to_on-hold’, __(‘Order Pending to On-Hold for customer’), get_order_email_arguments_description());
jigoshop_emails::register_mail(‘customer_order_status_pending_to_processing’, __(‘Order Pending to Processing for customer’), get_order_email_arguments_description());
jigoshop_emails::register_mail(‘customer_order_status_on-hold_to_processing’, __(‘Order On-Hold to Processing for customer’), get_order_email_arguments_description());
jigoshop_emails::register_mail(‘customer_order_status_completed’, __(‘Order Completed for customer’), get_order_email_arguments_description());
jigoshop_emails::register_mail(‘customer_order_status_refunded’, __(‘Order Refunded for customer’), get_order_email_arguments_description());
jigoshop_emails::register_mail(‘low_stock_notification’, __(‘Low Stock Notification’), get_stock_email_arguments_description());
jigoshop_emails::register_mail(‘no_stock_notification’, __(‘No Stock Notification’), get_stock_email_arguments_description());
jigoshop_emails::register_mail(‘product_on_backorder_notification’, __(‘Backorder Notification’), array_merge(get_stock_email_arguments_description(), get_order_email_arguments_description(), array(‘amount’ => __(‘Amount’, ‘jigoshop’))));
jigoshop_emails::register_mail(‘send_customer_invoice’, __(‘Send Customer Invoice’), get_order_email_arguments_description());
}, 999);