Large WordPress Website

I am having a very huge blog and shop store in wordpress. Now its become very slow, i am hosting sql on separate server using ssd harddrives. But i found queries like these running in server for very long might be causing the website to respond slow. How can i solve this.

I am paste the query i found running in server was above 2 mintues now. Only admin panel, edit posts section, add post section is very slow. With memcached, it had improve the performance but i am wondering why these queries takes place too slow.

SELECT SQL_CALC_FOUND_ROWS wp_posts.ID FROM wp_posts INNER JOIN wp_term_relationships ON (wp_posts.ID = wp_term_relationships.object_id) WHERE 1=1 AND ( wp_term_relationships.term_taxonomy_id IN 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