A suggestion for those who are still having issues with 5.0.2
After downgrading to 4.1.1 take a look at Plugin Organizer’s settings, in my case the selective plugin loading has been disabled, also check if You have done this:
IMPORTANT: To enable selective plugin loading you must move the /wp-content/plugins/plugin-organizer/lib/PluginOrganizerMU.class.php file to /wp-content/mu-plugins or wherever your mu-plugins folder is located. If the mu-plugins directory does not exist you can create it. The plugin will attempt to create this directory and move the file itself when activated. Depending on your file permissions it may not be successful.
If yes, try deleting and moving the file again and after doing all of this update to 5.0.2, this version solves (at least in my case) the fatal error.
I hope this could help someone.