I’m using bones too, with the same filestructure, so this should be a solution for you too.
<?php
require_once('library/bones.php');
require_once('library/custom-post-type.php');
require_once('library/admin.php');
if ( function_exists( 'add_theme_support' ) ) {
add_theme_support( 'post-thumbnails' );
set_post_thumbnail_size(90, 90, true);
add_image_size( 'suuri_vaaka_sixteen_col', 1000, 9999, false ); //300 pixels wide (and unlimited height)
add_image_size( 'pieni_vaaka_sixteen_col', 622, 9999, false ); //300 pixels wide (and unlimited height)
add_image_size( 'pieni_vaaka_three_col', 181, 120, true ); //300 pixels wide (and unlimited height)
add_image_size( 'pieni_vaaka_two_col', 118, 9999, false ); //300 pixels wide (and unlimited height)
add_image_size( 'pieni_vaaka_two_col_pysty', 118, 168, true ); //300 pixels wide (and unlimited height)
add_image_size( 'pieni_vaaka_mini', 55, 35, true ); //300 pixels wide (and unlimited height)
add_image_size( 'pieni_vaaka_mini_pysty', 55, 80, true ); //300 pixels wide (and unlimited height)
// additional image sizes
// delete the next line if you do not need additional image sizes
add_image_size( 'category-thumb', 300, 9999 ); //300 pixels wide (and unlimited height)
}
?>
My exact code (that works) is above. Please try it, to see if it works for you!