Custom comments.php not working for me

Hi there, I’m trying to create my own theme from scratch and I’m up to the comments part, this is my file:

[please use a Pastebin to post large chunks of code, following forum etiquette]

I have two comments there but none are appearing and the part that displays the comment count displays 2, am I missing a function in the functions.php file? Because this file is near empty save for a few widget based functions.

Note when I am using twentyten the comments are appearing just fine.

Hope someone can help!