Conditional Logic Not Saving – No Plugin Conflicts.

Thank you for reporting this and making sure it is not a plugin or theme compatibility.

Clicking “Update” without saving the conditions will discard any unsaved changes to them. So this is intentional, but I will try to make it more clear.

When you edit your conditions, it should look something like this:
https://i.imgur.com/EEJkXe8.png

As in the picture, you should be able to see a “Save changes” button to the right. Let me know if this is not the case.

The save button shows up in some instances, but not in others.

Because it might be easier to focus on something that’s not a custom post type, let’s instead try to replace the sidebar for the blog section of my site (I only have two instances where I need a sidebar – all blog-related pages and all woocommerce-related pages).

For most of the options in the drop-down menu, no save button appears. However, if you click “Posts,” the save button does appear. I also need this sidebar to appear on the blog category pages, so I choose “Categories” from the drop-down before hitting save. This is what it looks like at this point:

https://i1.wp.com/www.highoutput.com/wp-content/uploads/2016/04/Content-Aware-Sidebars-1.png

I then click the save button and it triggers a popup that says “conditions updated.” To see what has actually been saved, I refresh the page. It is still not saving anything from the dropdown menus, and the resulting page looks like this:

https://i2.wp.com/www.highoutput.com/wp-content/uploads/2016/04/Content-Aware-Sidebars-2.png

The front-end results are consistent – the new sidebar appears on the main blog index and individual posts, but does not show up on any category pages.

Thanks for showing how the problem looks, but unfortunately I cannot reproduce it. I do suspect that it is a JavaScript error since selecting “Category” in the dropdown does nothing.
It should add another input field where you can select categories. However, such error is usually caused by incompatibilities with other plugins or a theme.

Would it be possible for you to create an admin user on your site for jv [at] intox.dk, then I can take a look at it asap?