@nickaster
1 – All two database+server hosting and WordPress was syncronized for “Pacific Time” really!
2 – Try to disable “object cache module”
3 – Clean W3 Total Cache (completely) and waiting normal proxies flushing propagation …
4 – Use a plugin to view “cron process” (wp-crontrol for example)
5 – Try forked W3 Total Cache instead official release …
6 – Try WP Missed Schedule Version 2013.0131.3333
7 – Verify the possibility of other plugins conflict
8 – Verify that CDN really work …
9 – Disable caching for loggedin users (administrator for example)
10 – Downgrade WordPress 3.5.1 to 3.4.2
nickaster wrote: what did you see that was misconfigured?
Your cached files was not correctly served … configure all W3 total Cache functions (for example browser caching) …
P.S. Your W3 Total Cache Version used?