Compatibility issues with Types and Admin Columns plugins
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Anything Order causes taxonomy values to not display when doing a quick edit of a custom post type created with Types (with a custom taxonomy created by Types), and when the taxonomy term is displayed in the post list with Admin Columns. If the post is saved after a quick edit, the taxonomy term is removed from the post (unless it’s reassigned as part of the quick edit). Canceling the quick edit does not remove the taxonomy.
This might not have anything to do with Types and Admin Columns, i.e. it might still occur if the post type/taxonomy creation and taxonomy display are custom coded instead of being handled by plugins, but I don’t have time to test this.
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